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Oct 2023 DOI 10.14302/issn.2639-3166.jar-23-4463
Haroun M. Adam AbubakerCorresponding author
Genotype by environment (GE) interaction is considered to be among the major factors limiting the efficiency of breeding programs.Five chickpea genotypes were evaluated to study their adaptability and stability in eight environments of Sudan. The experiments were carried out in randomized complete block design (RCBD) with four replications in four locations in over two years (2017/2018 and 2018/2019).Stability was estimated using additive main effects and multiplicative interaction (AMMI) model.A Combined analysis of variance showed significant effects of genotypes, locations, years and their interactions on seed yield. Mean seed yield ranged between 1.88 and 1.45 t ha-1 for the genotypes FLIP 08-59 C and FLIP 09-187 C, respectively. The genotype FLIP 08-59 C gave the highest average seed yield and out-yielded the two checks, Shiekh Mohamed and Burgeig by 9.5% and 10.1%, respectively. The newly introduced (FLIP 08-59 C) showed non- significant differences in earliness as compared to the other two standard checks resistant to fusarium wilt disease and with good seed weight. The statistical analysis showed that genotype (G), environment (E) and their interaction (GEI) had highly significant (P ≤ 0.001) effect on seed yield. It also revealed that environmental differences accounted for 90.2% of the total variation. The results of data analysis displayed that the percentages of seed yield by environment, genotype and genotype environment interaction were 90.2%, 3.6% and 6.3%, respectively. The IPCA 1 and IPCA 2 axes (Principal Components) were highly significant P ≤ 0.001). The model for seed chickpea yield stability (the Additive Main Effect and Multiplicative Interaction (AMMI) model) showed that the G1 (FLIP 08-59 C) was adapted, high yielding and considered as stable genotype for Gezira, River Nile and Northern States of Sudan. In addition, this genotype is early flowering with non-significant differences in earliness as compared to the two checks and with good seed weight. Therefore, the above mentioned genotype FLIP 08-59 C could be recommended as commercially stable and high yielding cultivar and/or incorporated as breeding stocks in any future breeding programs aiming to produce high yielding genotypes of chickpea.
Apr 2023 DOI 10.14302/issn.2639-3166.jar-23-4500
A.Madam HarounCorresponding author
This investigation was carried out at the Demonstration Farm of the College of Agriculture- University of Bahri during 2018/2019 winter season to evaluate growth (morphological) and growth analysis (physiological) components in some sugar beet (Beta vulgaris L) genotypes under different nitrogen levels to know how well sugar beet plant performs during the growing season, Thus, to provide information to assist producers in identifying and introducing superior genotype and good management of nitrogen application in AlKadro area. The experiment was laid out in split plot design. The genotypes used were namely, Blaladi. Strube Sudan 01/14, Strube Sudan 02/14, Strube Sudan 04/14, Strube Sudan 05/14 and Strube Sudan 06/14, and the nitrogen levels were viz, 0, 80 and 120 kg urea per ha; applied twice (at the sowing and then 4 weeks after sowing). The evaluated components were; leaf number/plant, leaf area index (LAI), root length, root diameter, fresh and dry weight of foliage/plant, fresh and dry weight of root/plant; all determined at 5 terms. While Crop Growth Rates (CGR), Relative Growth Rate (RGR) and Net Assimilation Rate (NAR); determined at different periods of growth (intervals). The analysis of variance (ANOVA) revealed that at 4 weeks after sowing (WAS): leaf number (14.33- 17.03) , root length (19.05 – 21.75 cm), root diameter ( 7.93- 8.40 cm) foliage fresh ( 186.93 – 292.06 g) and dry ( 69.00 – 94.10 g) weight per plant, root fresh (72.66 – 108.88 g) and dry weight ( 12.54 – 22.08 g) per plant differed significantly (P≤ 0.05); at 7 and 10 WAS leaf number (22.39 -35.73 and 26.91 – 38.47, respectively), LAI ( 3.725 -5.645) , fresh and dry root weight per plant ( 586.78 – 913.81an 189.06 – 326.43 g, respectively) differed significantly; at 13 WAS: dry foliage weight ( 69.00 – 94.10 g), LAI ( 2.603 – 4.744), root diameter (10.09 – 11.92 cm) differed significantly; at 16 WAS only dry foliage (44.34 – 73.48 g) weight reflected significance. All other cases reflected insignificant differences among the evaluated genotypes. Moreover, all the studied components reflected insignificant differences among the nitrogen fertilizer levels and likewise genotype x nitrogen interaction (G x N) at the 5 sampled terms. Nevertheless, CGR, RGR and NAR displayed insignificant effect on the studied components in the evaluated periods.
Mar 2023 DOI 10.14302/issn.2639-3166.jar-22-4356
Abdou Ousseini ArdalyCorresponding author
In Niger, sorghum (Sorghum bicolor) is one of the most important staple crop for food and money. Despite the importance of the crop and its easiest adaptative capacity to dry, the crop is confronted to striga (Striga hermonthica), a plant parasite, which drastically hinder the productivity and causing yield loss between 20% to 80%. The best and easiest way to control and improve sorghum productivity is through the development of novel Striga resistance sorghum genotypes. The purpose of this study was to assess 20 sorghum genotypes from diverse country for striga resistance and grain yield capacity. Varieties with high yield average, medium size and resistance to Striga were found.
Feb 2023 DOI 10.14302/issn.2639-3166.jar-22-4403
E. A. Hamza FatihCorresponding author
The major a biotic stresses affecting chickpea production are high and low temperature, drought and salinity. Heat stress is a major a biotic stress factor, constraining chickpea production worldwide. This study was conducted to identifying chickpea genotypes combining heat tolerance and high yield potential and to study correlation among the heat tolerance indices. The genotypes were tested under different field-growing conditions, normal sown (non – heat stress) and late sown (heat stress) at two locations, Merowe and Gezira during winter season 2018/2019. The trials were laid out in alpha lattice design with three replications. Eight heat tolerance indices, which were most frequently used in plant breeding including, geometric mean productivity (GMP), yield index (YI), mean productivity (MP), stress susceptibility index (SSI), stress tolerance index (STI), tolerance index (TOL), sensitivity heat index (SHI) and relative heat index (RHI) were calculated based on seed yield under heat stress (Ys) and non – heat stress (Yp) conditions. Under both environments, the results from combined analysis of variance showed that there were highly significant differences among the genotypes for all traits studies. There were highly significant differences observed among the tested chickpea genotypes response to heat stress. Seed yield in stress (Ys) condition was positive and highly significant correlated with geometric mean productivity, yield index, stress tolerance index and relative heat index. The Ys was negative and highly significant correlated with stress susceptibility index and sensitivity heat index. Seed yield in non-stress (Yp) condition was positive and significant correlated with geometric mean productivity, yield index, stress tolerance index and tolerance index. The results of this research showed that the six indices, GMP, YI, SSI, STI, SHI and RHI can be used as optimal indicators for screening heat tolerant chickpea genotypes. Nine genotypes including four released improved varieties (Shiekh Mohamed, Wad Hamid, Salwa and Hwata) and five genotypes (no. 11, 4, 26, 30 and 34) are most stable chickpea genotypes for heat tolerance and can be further used in breeding program. These genotypes can be used in the chickpea national breeding program to develop varieties with improved heat tolerance in Sudan. Genotype no. 11 (FLIP 08-59 C) was release by Sudan national variety release committee for commercial production under the name Elbarkal in September 2022 to will be grown in Gezira, River Nile and Northern States of Sudan.
Jul 2018 DOI 10.14302/issn.2639-3166.jar-18-2083
A. Okasha SalahCorresponding author
Agronomy Dept, Faculty of Agriculture, Suez Canal University, Ismailia, Egypt
This study was conducted to determine drought tolerant indices of some sugar beet genotypes under water stress and non-stress conditions. Nine sugar beet (Beta Vulgaris L.) genotypes were tested in a Split-plot experiment based on a randomized complete block design in three replications under three levels of water stress 100%, 75% and 50% from plant requirements at the experimental farm Faculty of Agriculture, Suez Canal University, Ismailia, Egypt during 2015/ 2016 and 2016 / 2017 seasons. Twelve drought tolerance indices were used in this study, stress sensitivity index (SSI), stress tolerance (TOL), mean productivity (MP), geometric mean (GMP), harmonic mean (HM),yield stability index (YSI), yield index (YI), stress tolerance index (STI), sensitivity drought index (SDI), relative drought index (RDI), drought response index (DI) and stress susceptibility percentage index (SSPI). GMP, MP and STI were more informative towards classification of better or superior genotypes with respect to tolerant and sensitive groups. The results showed that the genotypes with high STI, GMP and MP values were suitable for cultivation under drought stress and non-stress environments. Both Yp and Ys of root yield in the control-50% analysis had significantly positive correlated (P value<0.05) with MP, GMP, YI, HM and DI, This indicates that these indices were more effective in identifying high yielding genotypes under drought stress as well as non-stress conditions.Principal components analysis showed that the first two components in the control-50% analysis, genotype Bts 1237 and Temar were identified as the most stable high yielding genotypes in both environments
May 2025 DOI 10.14302/issn.2639-3166.jar-25-5495
Mekonnen Adare ZenebeCorresponding author
Enset (Ensete ventricosum) is a vital food security crop cultivated in South and South-western parts of Ethiopia. However, enset production and the farming families have been threatened by Xanthomonas wilt and its spread in the farming system. Thus, this study was conducted to investigate the soil fertility and plant management practices association on the incidence of Enset Xanthomonas wilt. Data on soils fertility and diseases from enset based farming clustered into inner, outer and outfield farm zone were sampled and surveyed. The result indicated that soil chemical properties significantly (p≤0.05) varied from inner to outfield farm zone. Significantly maximum nutrients store revealed in inner enset farm zones. Disease incidence reduced from inner to the outfield enset farm zone. Disease prevalence and disease incidence scored 28.5% and 11.6%, respectively depending on altitude and genotypes. Soil fertility levels in the enset inner and outfield plots were varied purposely to cultivate enset products as kocho, bulla or amicho (cooking type). The variations in soil fertility and Xanthomonas wilt incidence was associated with management practices applied for desired enset products. Therefore, management practices in enset based farming, soil fertility and location of enset planting zones found to be major indicators for disease incidence addressing to device control interventions.
Sep 2024 DOI 10.14302/issn.2690-4721.ijcm-24-5195
Mutile Kavai SusanCorresponding author
The persistence of multidrug-resistant (MDR) Salmonella Typhi (S. Typhi) is a challenge especially in regions where typhoid is endemic. Surveillance of circulating genotypes of MDR S. Typhi is crucial in typhoid acute cases and carriers. This study aimed to investigate genotypic diversity of S. Typhi from symptomatic and asymptomatic children in endemic settings in Nairobi, Kenya. Symptomatic and asymptomatic individuals’ ≤ 16 years were recruited at four health facilities and tested for typhoid through stool cultures. The S. Typhi isolates were subjected to antibiotic susceptibility testing to investigate multidrug resistance. The MDR S. Typhi isolates’ DNA was extracted and illumina sequenced. Raw reads were de novo assembled and analyzed by pathogen-watch. From the 90 sequenced isolates, 60 (67%) were confirmed to be S. Typhi (sequence Type 1 and genotype 4.3.1). Out of the 60 S. Typhi strains; 39 (65%) had plasmids, from these 38 (97%) had IncHI1 plasmids alone. Out of the 60, 59 (98%) S. Typhi isolates had blaTEM-1D. Point mutations conferring reduced susceptibility to quinolones were detected in 42 (70%) of S. Typhi isolates, from these; 14 (33%) had gyrA S83Y , and 28 (67%) gyrB S464F genes, respectively. This study reports 4.3.1 (H58) as the most dominant S. Typhi genotype responsible for spread of MDR phenotypes carried on IncHI1 plasmids. Presence of MDR S. Typhi with resistance genes such as blaTEM-1Dand reduced susceptibility to ciprofloxacin especially among asymptomatic individuals, reiterates the need for use of typhoid conjugate vaccine among vulnerable children as a control and prevention measure against typhoid.
Jun 2024 DOI 10.14302/issn.2374-9431.jbd-24-5077
Isea RaúlCorresponding author
Dengue is a global arbovirus disease primarily carried by Aedes aegypti and Aedes albopictus mosquitoes. It has four serotypes (DENV1, DENV2, DENV3, and DENV4) and is classified into distinct genotypes. The epidemic is complicated by immunological interactions and viral lineage turnover. Neurological problems are commonly associated with DENV2 and DENV3, with DENV2 displaying the most severe symptoms. Direct viral invasion, host-mediated immune system reactions, or host-mediated metabolic alterations can all result in dengue-related neurological issues. The three dengue vaccinations and the significance of meta-analyses for genetic data will also be covered. Finally, establish a connection with the microRNAs associated with dengue fever, creating new opportunities for the creation of dengue treatment regimens involving microRNAs.
Mar 2020 DOI 10.14302/issn.2374-9431.jbd-20-3195
E.G SergeevaCorresponding author
FIRST St. Petersburg state medical University named after academician I. P. Pavlov
Purpose The goals of the present study were to assess the genotypic and allelic distribution of Bsm-I (rs1544410) and Apa-I (rs7975232) polymorphisms of the vitamin D receptor (VDR) gene in coronary artery disease (CAD) patients in comparison to control patients of the same age without CAD and to determine whether these gene variants are associated with dyslipidemia. Materials and Methods Based on a case-control design, 302 hospitalized patients with CAD and 194 people of comparable age without CAD were enrolled in the study. The BsmI and ApaI polymorphisms of VDR gene were studied using polymerase chain reaction followed by restriction analysis. The allele digested by the restriction enzyme was denoted by a lower letter, whereas that not digested was indicated by a capital letter. Determination of the level of vitamin D and immunoreactive insulin in the blood serum was carried out using the immuno-enzyme method. Results The bb genotype of Bsm-I VDR gene polymorphism was detected more often in patients with CAD than in the comparison group with an increased risk of CAD by 1.52 times (p=0.006, OR=1.52(1.05÷2.2). The level of HDL cholesterol was higher in CAD patients − carriers of BB genotype compared to its level in Bb genotype carriers and bb genotype carriers (1,13±0,05 mmol/l, 1,01±0,03 mmol/l, 1,02±0,03 mmol/l respectively, p<0,05). The level of vitamin D was higher in patients with BB genotype compared to its level in bb genotype carriers (45.12±3.73 nmol / l and 34.16±1.95 nmol/l respectively, p=0.008). The occurrence of a allele of Apa-I VDR gene polymorphism was higher in patients with CAD than in the control group (p=0.02, OR=1.21(0.93÷1.57). HDL cholesterol level was higher in CAD patients - AA genotype carriers compared with carriers of Aa and aa genotypes (1.18±0.08 mmol / l, 1,02±0.02 mmol / l and 1.01±0.03 mmol/l respectively, p<0,05). Immunoreactive insulin level was significantly higher in CAD patients – aa genotype carriers. No differences in LDL cholesterol and triglycerides were found. Vitamin D level was lower in CAD patients - Aa and aa genotype carriers (33,8±33,9 nmol/l ,p=0,02 and 24,7±4,9 nmol/l, p=0,05 respectively in comparison to vitamin D level = 43,3 ±4,2 nmol/l in AA genotype carriers). Conclusion The bb genotype of Bsm-I VDR gene polymorphism is associated with an increased risk of CAD. A carriage of b allele in CAD patients is associated with lower level of vitamin D and HDL cholesterol. A carriage of a allele of Apa-I VDR gene polymorphism in CAD patients is associated with lower level of vitamin D and HDL cholesterol.
Jun 2019 DOI 10.14302/issn.2374-9431.jbd-19-2788
Sergeeva E.G.Corresponding author
First Pavlov State Medical University of St. Petersburg
Purpose The goal of this study is to determine the association of L162V polymorphism of PPAR-alpha gene, A603G polymorphism of tissue factor gene and the risk of coronary heart disease development in Russian population. Materials and Methods A clinical and genetic study of 414 patients with CHD and 220 people of comparable age without CHD which amounted to a control group was performed. L162L and L162V genotypes of L162V polymorphism of PPAR-α gene, A603A, A603G and G603G genotypes of A603G polymorphism of tissue factor gene were determined by polymerase chain reaction followed by restriction analysis. Results A carriage of L162V genotype and V allele of PPAR-α gene was associated with an increase risk of CHD in 2,13 times (L162V genotype) and in 2,21 times (V allele), with an increase in risk of CHD before the age of 45 years in 4,68 times (L162V genotype) and in 3,88 times (V allele). Significantly higher in patients with CHD compared with the general population and in patients with a carriage of G603G genotype and G allele of tissue factor gene was associated with the increase of CHD risk in 2,68 times (G603G genotype) and in 4,37 times (G allele), occurred more frequently in patients with debut of disease at age of 45 years and younger. The level of tissue factor was significantly higher in patients with CHD – carriers G603G genotype compared with carriers A603A genotype (217,9±15,2 pg/ml and 152,6±30,4 pg/ml, respectively, p=0,04). A carriage of the combination of L162V and G603G genotypes was associated with an increased risk of CHD in 3,04 times. Conclusion A carriage of V allele of L162V polymorphism of PPAR-α gene and G allele of A603G polymorphism of tissue factor gene, as well as their pair combination are associated with an increased CHD risk, especially at age 45 years or less.
Mar 2019 DOI 10.14302/issn.2639-3166.jar-19-2237
Okasha Salah.A.Corresponding author
Agronomy. Dept, Fac. of Agri., Suez Canal Univ., Ismailia, Egypt.
In regions where irrigation water supplies are limited, drainage or water with salinity can be used to supplement them. Field experiments were carried out during the quinoa growing season of 2015/2016 and 2016/2017 at North Sinai in order to evaluate six quinoa genotypes (Chenopodium quinoa Willd.) under saline irrigation (5400 ppm) on growth, yield, its component, seeds chemical composition under field conditions. For plot 50% heading and maturity, the most earliness averages were 47.25 and 92.50 day, respectively for genotype Q-Q37-1, while the least earliness averages were 55.75 and 96.25 for genotypes KVLSRA 2 and KVLSRA 1, respectively. The highest averages was recorded for number of panicles/plant, plant fresh weight, plant yield weight, harvest index, 1000 seeds weight index and yield / fed-1 (ton) were 12.27, 82.32 gm, 17.83 gm, 28.89 %, 2.97 gm and 1.84 ton fed-1 ) for genotypes Q-Q37-1, Q-Q37-1, Q-Q37-1, Q-Q37-1, Q52 and Q-Q37-1, respectively. While, the lowest values were recorded for genotypes KVLSRA1, KVLSRA1, KVLSRA1, Regeolona, KVLSRA1 and KVLSRA1 with averages 8.72, 23.73gm, 5.52 gm, 22.76 %, 2.43 gm and 1.23 ton fed-1, respectively. For protein and carbohydrates total content, values ranged from 14.75 to 10.59 and from 58.13 to 54.64 % for genotypes Q52 and Regeolona, respectively. While in moisture content, values ranged from 11.66 to 10.83 for genotypes KVLSR1 and Q-Q37-1 , respectively. Also, fats content ranged from 10.44 to 7.14 % for genotypes Q52 and Regeolona, respectively. While values of saponin ranged from 0.56 to 0.37% for genotypes KVLSR1 and Regeolona, respectively.
Oct 2018 DOI 10.14302/issn.2641-9467.jgrc-18-2339
Sarmah PrabaleeCorresponding author
Jr. Scientist-S2 (PBG), AICRP on Vegetable Crops, Department of Horticulture, AAU, Jorhat, Assam, India.
We evaluated a set of 37 chilli genotypes collected and maintained at Assam Agricultural University, Jorhat for 27 different traits related to plant habit (5), leaf (6), flower (2), fruit (13) and biotic stress (1). The variation in fruit yield among the genotypes could be attributed to high coefficients of variability for component traits viz., number of fruits per plant (91.7%), plant height (80.8%), leaf breadth (55.9 %), fruit weight (49.7%), leaf length (45.4%) fruit length (35.8%), fruit breadth (35.5%) and number of branches per plant (22.2%). Maximum phenotypic variants were observed for fruit traits followed by leaf characteristics. Phylogenetic analysis revealed Euclidean distances varying from a minimum of 2.065 and a maximum of 13.311 indicating the diverse nature of the genotypes. UPGMA clustering grouped the genotypes into 5 distinct clusters. The largest one, cluster I, had 26 genotypes belonging to Capsicum annuum var. acuminatum. Cluster II consisted of Capsicum annuum var. conoides with cone-shaped fruits. Cluster III included Moni Jolokia, a perennial shrub with cone-shaped globose erect fruits which clustered in between the other local C. annuum sp. Bireek and Mem Jolokia. The fourth cluster (IV) included the local chilli genotypes - Mem Jolokia, Bhekuri Jolokia and Haitha Jolokia which were perennial, with green stem and leaves. Cluster V included the C. chinense genotypes consisting of Manipuri Bhut, Bor Bhut and Lota Bhut. The first principal component explained 34.93% of the total variation contributed by mostly leaf and fruit characteristics. The fruit characters in this component showed significant positive correlation with leaf length, breadth and plant height indicating their importance in the morphological characterization of the chilli genotypes.
Mar 2018 DOI 10.14302/issn.2639-3166.jar-18-1987
Narain PremCorresponding author
Professor and Independent Researcher, 29278 Glen Oaks Blvd. W., Farmington Hills MI 48334-2932
The scientific and technological interventions for attaining precision in plant genetics and breeding since Mendel’s discovery of genetic laws have been critically reviewed in terms of cloning technology and reverse genetics, chip technology, genetically modified organisms and CRISPR-based gene editing technology. Their roles in further refining the plant genetics and breeding practices particularly their exploitation in creating variations and their use for development of superior genotypes in model crops like wheat and rice have been discussed. It is stressed how such interventions could prove to be promising for meeting future crop improvement program in terms of climate change, bio-fortification, imaging technology, statistics, big data revolution and deep learning.
Jun 2015 DOI 10.14302/issn.2379-7835.ijn-14-591
Negri RossellaCorresponding author
Department of Translational Medicine, Pediatrics, European Laboratory for Food Induced Diseases, University of Naples Federico II, Italy.
Objectives Taste sensitivity is an important determinant of food choice and differs between children and adults. This difference is probably due to several factors that constitute an individual’s phenotype. The aim of this study was to explore taste perception in relation to the TAS2R38 and CAVI (gustin) genotypes in age classes from infancy to adulthood in a Mediterranean population. Methods In this cross-sectional study we evaluated the TAS2R38 and gustin genotypes and administered a standardized PROP taste test in 705 individuals (435 adults, 270 children); the sample included 224 mother-child dyads. We also explored the acceptance and consumption of bitter and non-bitter vegetables. Results Sensitivity to bitterness was strongly related to the TAS2R38 haplotype, and we observed an intriguing relationship with age. In fact, children were more sensitive than adults with the same TAS2R38 haplotype also within mother-child dyads. The mother-child tasting differences decreased with age and became minimal when children reached adolescence. Variations in the gustin gene did not contribute significantly to the overall taste phenotype, but helped to differentiate among non-tasters. Conclusions The genetic profile of the bitter-taste receptor TAS2R38 explains most of the variance in bitter taste perception, but the related phenotype is also strongly influenced by age, also in mother-child dyads that share the same genotype. This finding is likely to have a significant impact on the complex feeding relationship between mother and child.