Author Rights and Data Ownership
Authors retain ownership of all research data. We encourage authors to deposit datasets, protocols, and supplementary files in trusted repositories and allow the journal to link to these resources from the published article. This improves transparency and enables reuse by the AMR community.
When data cannot be fully shared due to legal, ethical, or commercial constraints, authors should provide a clear data availability statement describing limitations and how qualified researchers can request access.
What to Archive
Archive materials that support replication, validation, and future research applications.
Experimental Data
Core datasets that support primary findings
- Susceptibility testing outputs
- Genomic or sequencing data
- Clinical outcome datasets
- Biofilm or assay measurements
Methods and Protocols
Detailed workflows and validated procedures
- Laboratory protocols and SOPs
- Instrumentation settings
- Software and pipeline versions
- Statistical analysis scripts
Supplementary Files
Materials that extend the main manuscript
- Extended figures and tables
- Raw images or assay outputs
- Validation datasets
- Expanded methodological notes
Data Availability Statement
Every manuscript must include a data availability statement that identifies repositories, accession numbers, or access restrictions. For pathogen genomics or surveillance work, provide database names and identifiers to ensure reliable access.
Repository Links
Use repositories that provide persistent identifiers and stable access paths.
Metadata Quality
Include clear file descriptions, units, and methodological context.
Code Sharing
Provide scripts or pipelines required to reproduce computational results.
Data Citation
Cite datasets in the reference list with DOIs or accession numbers.
Sensitive Data and Controlled Access
We balance openness with patient privacy, biosafety requirements, and legal constraints. If data contain identifiable patient information or sensitive laboratory details, de-identify records and provide controlled access where appropriate.
Human Subjects
Confirm consent and de-identification before sharing clinical datasets.
Biosecurity
Restrict access to sensitive pathogen data when required by regulation.
Commercial Limits
Disclose proprietary restrictions and share what is legally permissible.
Permissions Granted to the Journal
By publishing with us, authors grant permission for the journal to link datasets, display data availability statements, and host supplementary files alongside the article. These permissions do not transfer ownership and are intended solely to improve transparency and access for readers.
Repository Best Practices
Choose repositories that provide persistent identifiers and long-term preservation. Include a README describing file formats, units, and any processing steps. For genomic data, provide accession numbers and reference genome details so readers can interpret findings correctly.
Embargoes and Controlled Access
If data must remain under embargo or controlled access, explain the reason and expected release date. Provide a contact pathway for qualified access and document any biosafety or privacy constraints. Transparent restrictions preserve trust while protecting sensitive information.
Data Citation and Credit
Cite datasets in the reference list using repository-provided DOIs or accession numbers. Data citation increases the visibility of underlying resources and ensures proper credit to research teams and institutions.
Author Responsibilities
Authors are responsible for confirming that shared data are accurate, legally permissible, and aligned with consent or biosafety requirements. The journal may request clarification or additional metadata if needed to support reproducibility.
Recommended AMR Data Elements
Whenever possible, include isolate identifiers, collection dates, geographic context, antimicrobial panels tested, and interpretive criteria. These details improve comparability across studies and support regional or global surveillance efforts.
Access Upon Request
If data cannot be shared openly, provide a clear statement describing the request process, eligibility, and expected response time. This transparency allows reviewers and readers to understand how evidence can be verified.
Clinical Data Anonymization
Remove direct identifiers and apply accepted anonymization techniques before sharing clinical datasets. Describe anonymization steps in the data availability statement to support ethical transparency.
Repository Selection Guidance
Select repositories that provide persistent identifiers and long term access. If sensitive data require controlled access, explain the restrictions and provide a contact point for qualified requests. Metadata should be sufficient to locate, interpret, and reuse archived datasets responsibly.
Support Reproducible AMR Science
Clear archiving practices strengthen credibility and accelerate global progress against resistance.